# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "ecodive" in publications use:' type: software license: MIT title: 'ecodive: Parallel and Memory-Efficient Ecological Diversity Metrics' version: 2.3.0 doi: 10.21105/joss.09777 identifiers: - type: doi value: 10.32614/CRAN.package.ecodive abstract: Computes alpha and beta diversity metrics in a parallel, memory-efficient manner using 'C' and 'pthreads'. Implements 51 classic, compositional, and phylogenetic indices including Shannon, Bray-Curtis, Faith, JSD, Hellinger, Robust Aitchison, and the UniFrac family. Provides random sub-sampling for table rarefaction and parses Newick trees into 'phylo' objects. Integrates with data structures from 'phyloseq', 'rbiom', and other common bioinformatics packages. Algorithms are described in Smith et al. (2026) . authors: - family-names: Smith given-names: Daniel P. email: dansmith01@gmail.com orcid: https://orcid.org/0000-0002-2479-2044 preferred-citation: type: article title: 'ecodive: Parallel and Memory-Efficient R Package for Ecological Diversity Analysis' authors: - family-names: Smith given-names: Daniel P. email: dansmith01@gmail.com orcid: https://orcid.org/0000-0002-2479-2044 - family-names: Cregeen given-names: Sara J. Javornik - family-names: Petrosino given-names: Joseph F. journal: Journal of Open Source Software year: '2026' volume: '11' issue: '121' doi: 10.21105/joss.09777 url: https://joss.theoj.org/papers/10.21105/joss.09777 start: '9777' repository: https://cmmr.r-universe.dev repository-code: https://github.com/cmmr/ecodive commit: 03568310203670f9ea930df5854c595805559f48 url: https://cmmr.github.io/ecodive/ date-released: '2026-06-04' contact: - family-names: Smith given-names: Daniel P. email: dansmith01@gmail.com orcid: https://orcid.org/0000-0002-2479-2044