rbiom - Read/Write, Analyze, and Visualize 'BIOM' Data
A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.
Last updated 15 days ago
9.07 score 15 stars 6 dependents 117 scripts 25k downloadsjobqueue - Run Interruptible Code Asynchronously
Takes an R expression and returns a Job object with a $stop() method which can be called to terminate the background job. Also provides timeouts and other mechanisms for automatically terminating a background job. The result of the expression is available synchronously via $result or asynchronously with callbacks or through the 'promises' package framework.
Last updated 21 hours ago
6.40 score 2 stars 1 dependents 12 scripts 238 downloadsfillpattern - Patterned Fills for 'ggplot2' and 'grid' Graphics
Adds distinctive yet unobtrusive geometric patterns where solid color fills are normally used. Patterned figures look just as professional when viewed by colorblind readers or when printed in black and white. The dozen included patterns can be customized in terms of scale, rotation, color, fill, line type, and line width. Compatible with the 'ggplot2' package as well as 'grid' graphics.
Last updated 9 months ago
5.28 score 8 stars 7 dependents 13 scripts 1.7k downloadssemaphore - Shared Memory Atomic Operations
Implements named semaphores from the 'boost' 'C++' library <https://www.boost.org/> for interprocess communication. Multiple 'R' sessions on the same host can block (with optional timeout) on a semaphore until it becomes positive, then atomically decrement it and unblock. Any session can increment the semaphore.
Last updated 5 days ago
cpp
4.38 score 2 stars 2 dependents 489 downloads